Command-line tool#
clop#
Group command.
clop [OPTIONS] COMMAND [ARGS]...
Options
- --version#
Show the version and exit.
eq1#
pH-deps for Kd.
clop eq1 [OPTIONS] KD1 PKA PH
Arguments
- KD1#
Required argument
- PKA#
Required argument
- PH#
Required argument
fit-titration#
Fit Titration group command.
fit-titration [OPTIONS] COMMAND [ARGS]...
Options
- --version#
Show the version and exit.
- -v, --verbose#
Verbosity of messages.
- -o, --out <out>#
Output folder.
- --is-ph, --no-is-ph#
Concentrations are pH.
- Default:
True
glob#
Update old glob fit of multiple datasets.
fit-titration glob [OPTIONS] FILE
Options
- -b, --boot <boot>#
Number of booting iterations.
- --weight, --no-weight#
Use residue weights.
- Default:
True
Arguments
- FILE#
Required argument
spec#
Update old svd or band fit of titration spectra.
fit-titration spec [OPTIONS] CSV_F NOTE_F
Options
- -b, --band <band>#
Integration interval from <1> to <2>
Arguments
- CSV_F#
Required argument
- NOTE_F#
Required argument
ppr#
Parse Plate Reader ppr group command.
ppr [OPTIONS] COMMAND [ARGS]...
Options
- --version#
Show the version and exit.
- -v, --verbose#
Verbosity of messages.
- -o, --out <out>#
Output folder.
enspire#
Save spectra as csv tables from EnSpire xls file.
ppr enspire [OPTIONS] CSV_F [NOTE_F]
Options
- -b <bands>#
Label and band interval (format: LABEL LOWER UPPER)
Arguments
- CSV_F#
Required argument
- NOTE_F#
Optional argument
tecan#
Convert a list of plate reader acquisitions into titrations.
LIST_FILE : List of Tecan files and concentration values.
Saves titrations as .dat files and fits all wells using 2 labels. The function produces:
K plot
ebar and (for selection) ebarZ plot
all_wells pdf
csv tables for all labelblocks and global fittings.
Note: Buffer is always subtracted if scheme indicates buffer well positions.
ppr tecan [OPTIONS] LIST_FILE
Options
- --scheme <scheme>#
Plate scheme (buffers CTRs).
- --dil <dil>#
Initial volume and additions.
- --bg#
Subtract buffer (scheme wells==’buffer’).
- --norm#
Normalize using metadata (gain, flashes).
- --weight, --no-weight#
Use residue weights.
- Default:
True
- --is-ph, --no-is-ph#
Concentrations are pH.
- Default:
True
- --fit, --no-fit#
Perform also fit.
- Default:
True
- --fit-all#
Fit all exported data.
- --png, --no-png#
Export png files.
- Default:
True
- --pdf#
Full report in pdf file.
- -t, --title <title>#
Title for some plots.
- --Klim <klim>#
Range MIN, MAX of plot_K.
- --sel <sel>#
Select from K_MIN S1_MIN.
Arguments
- LIST_FILE#
Required argument
note_to_csv#
Convert a tab-separated data file into a CSV file.
note_to_csv [OPTIONS] NOTE
Options
- -o, --output <output>#
Output CSV file.
- -l, --labels <labels>#
Labels to be appended.
- -t, --temp <temp>#
Temperature to be appended.
Arguments
- NOTE#
Required argument